MirGeneDB ID | Cmi-Novel-2 |
Family name |
CHO-NOVEL-2 (all species) |
Seed |
UUUUUGC |
Species |
Australian ghostshark (Callorhinchus milii) |
MiRBase ID |
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Paralogues |
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Orthologues |
Sto-Novel-2
|
Node of Origin (locus) |
Chondrichthyes
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Node of Origin (family) |
Chondrichthyes
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Genome context (GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635864.1: 11626459-11626518 [-]
UCSC
Ensembl
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Precursor (pre-Mir +30nt flank) |
GACGGCCACCCGCGUGAGCGAUGUGAUGAUGUUUUUGCGACGCGAUGACGUUUUUCGACACAAAUUACAUCAUCACGACGCGAAUUACGUCAUCGCGUUGCACGGUUACACAUCAGUGGG
Get precursor sequence
|
Structure | 10 20 30 40 50
GACGGCCACCCGCGUGA-- U-| A C C UUUUCGA
GCGAUGUGAUGAUGU UUUGCG CG GAUGA GU \
CGUUGCGCUACUGCA AAGCGC GC CUACU CA C
GGGUGACUACACAUUGGCA UU^ A A A UUAAACA
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
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Bl |
Br |
Ey |
Gi |
Gl |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Sk |
Sp |
Te |
Ut |
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Mature sequence |
Cmi-Novel-2_5p |
mirBase accession | None |
Sequence |
0- GUUUUUGCGACGCGAUGACGU -21
Get sequence
|
Star sequence |
Cmi-Novel-2_3p* |
mirBase accession | None |
Sequence |
38- AUCAUCACGACGCGAAUUACGU -60
Get sequence
|