| MirGeneDB ID | Cmi-Novel-5 |
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| Family name |
CMI-NOVEL-5 (all species) |
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| Seed |
CGAGUGA |
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| Species |
Australian ghostshark (Callorhinchus milii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. milii
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| Node of Origin (family) |
C. milii
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Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI636171.1: 285897-285955 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GAUCACACACUGGAGUAGGUGGUGCCCUGAUCGAGUGAAACUCUUUCCACAUAUAAAUGUGUCGAAUGUGGAACAAGUUUUACGCGUUCAGGAUAACCUCCAGAUACACCAACGAUCGC
Get precursor sequence
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| Structure | 10 20 30 40 50
GAUCACACACUGGAGUA- U GC-| U A CU AUAAAU
GG GGU CCUGA CG GUGAAACU UUCCACAU \
CC CCA GGACU GC CAUUUUGA AAGGUGUA G
CGCUAGCAACCACAUAGA U AUA^ U G AC AGCUGU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| Comment | There is a second Dicer cut +1 on the 3p arm. |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
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| Mature sequence |
Cmi-Novel-5_5p |
| mirBase accession | None |
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| Sequence |
0- UCGAGUGAAACUCUUUCCACAU -22
Get sequence
|
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| Star sequence |
Cmi-Novel-5_3p* |
| mirBase accession | None |
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| Sequence |
37- GUGGAACAAGUUUUACGCGUUC -59
Get sequence
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