| MirGeneDB ID | Cmi-Novel-7 |
|---|
| Family name |
CMI-NOVEL-7 (all species) |
|---|
| Seed |
CGAGUGA |
|---|
| Species |
Australian ghostshark (Callorhinchus milii) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
C. milii
|
|---|
| Node of Origin (family) |
C. milii
|
|---|
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI636171.1: 285897-285955 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GAUCACACACUGGAGUAGGUGGUGCCCUGAUCGAGUGAAACUCUUUCCACAUAUAAAUGUGUCGAAUGUGGAACAAGUUUUACGCGUUCAGGAUAACCUCCAGAUACACCAACGAUCGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GAUCACACACUGGAGUA- U GC-| U A CU AUAAAU
GG GGU CCUGA CG GUGAAACU UUCCACAU \
CC CCA GGACU GC CAUUUUGA AAGGUGUA G
CGCUAGCAACCACAUAGA U AUA^ U G AC AGCUGU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Dicer cut +1 on the 3p arm. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Bl |
Br |
Ey |
Gi |
Gl |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Sk |
Sp |
Te |
Ut |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Cmi-Novel-7_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UCGAGUGAAACUCUUUCCACAU -22
Get sequence
|
|---|
| Star sequence |
Cmi-Novel-7_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- GUGGAACAAGUUUUACGCGUUC -59
Get sequence
|
|---|
