| MirGeneDB ID | Cpi-Mir-9597 |
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| Family name |
MIR-9597 (all species) |
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| Seed |
AAAUAUC |
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| Species |
Western painted turtle (Chrysemys picta bellii) |
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| MiRBase ID |
cpi-mir-9597
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. picta
|
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| Node of Origin (family) |
C. picta
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Genome context
(chrPic1) |
JH584680: 5293575-5293634 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CCCUGUAAUGGAUGUCAGGCACUUGGGCCCAGAUCCUAAGACGUAUUUAGAUGCUUAACAUUAGAUACCUAAAUAUCUUUCAGGAUCUGGGCCCUGAUGAAUAUUCCAACAGUAUACCAG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CCCUGUAAUGGAUGUCAGG--| CUU A C AUGCUUAA
CA GGGCCCAGAUCCU AGA GUAUUUAG C
GU CCCGGGUCUAGGA UUU UAUAAAUC A
GACCAUAUGACAACCUUAUAA^ AGU C C CAUAGAUU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Cpi-Mir-9597_5p* |
| mirBase accession | MIMAT0037990 |
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| Sequence |
0- AGAUCCUAAGACGUAUUUAG -20
Get sequence
|
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| Mature sequence |
Cpi-Mir-9597_3p |
| mirBase accession | MIMAT0037991 |
|---|
| Sequence |
39- UAAAUAUCUUUCAGGAUCUGG -60
Get sequence
|
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