MirGeneDB ID | Dan-Novel-1 |
Family name |
DAN-NOVEL-1 (all species) |
Seed |
UAGGUUU |
Species |
Fruit fly (Drosophila ananassae) |
MiRBase ID |
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Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
D. ananassae
|
Node of Origin (family) |
D. ananassae
|
Genome context (Dana_caf1) |
scaffold_13335: 210604-210664 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GACGCAGAAAAAAAGAGGAGCUAGUUUCUUUGCCAUACUGCUCAAACUUAAUUUGUAUUUAAAAAAAUUAGGUUUGGUAGUAUUUGGCGAAAAAAAUUAGAUUCCGAAGCUACGGAGAGUA
Get precursor sequence
|
Structure | 10 20 30 40 50
GACGCAGAAAAAAAGAGGAG- C- --| U UGUAU
CUAGUUU UUUGCCA UACUGC CAAACUUAAUU U
GAUUAAA AAGCGGU AUGAUG GUUUGGAUUAA U
AUGAGAGGCAUCGAAGCCUUA AA UU^ - AAAAA
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
|
|
Star sequence |
Dan-Novel-1_5p* |
mirBase accession | None |
Sequence |
0- UGCCAUACUGCUCAAACUUAAUU -23
Get sequence
|
Mature sequence |
Dan-Novel-1_3p |
mirBase accession | None |
Sequence |
37- UUAGGUUUGGUAGUAUUUGGCGAA -61
Get sequence
|