MirGeneDB 3.0

MirGeneDB ID

Dan-Novel-1

Family name DAN-NOVEL-1 (all species)
Seed UAGGUUU
Species Fruit fly (Drosophila ananassae)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) D. ananassae
Node of Origin (family) D. ananassae
Genome context
(Dana_caf1)
scaffold_13335: 210604-210664 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GACGCAGAAAAAAAGAGGAGCUAGUUUCUUUGCCAUACUGCUCAAACUUAAUUUGUAUUUAAAAAAAUUAGGUUUGGUAGUAUUUGGCGAAAAAAAUUAGAUUCCGAAGCUACGGAGAGUA
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Structure
        10        20          30          40        50         
GACGCAGAAAAAAAGAGGAG-       C-       --|     U           UGUAU 
                     CUAGUUU  UUUGCCA  UACUGC CAAACUUAAUU     U
                     GAUUAAA  AAGCGGU  AUGAUG GUUUGGAUUAA     U
AUGAGAGGCAUCGAAGCCUUA       AA       UU^     -           AAAAA 
 .       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Fe
Star sequence

Dan-Novel-1_5p*

mirBase accessionNone
Sequence
0- UGCCAUACUGCUCAAACUUAAUU -23
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Mature sequence

Dan-Novel-1_3p

mirBase accessionNone
Sequence
37- UUAGGUUUGGUAGUAUUUGGCGAA -61
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