| MirGeneDB ID | Dan-Novel-18 |
|---|
| Family name |
DAN-NOVEL-18 (all species) |
|---|
| Seed |
ACUUUGA |
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| Species |
Fruit fly (Drosophila ananassae) |
|---|
| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
|
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| Node of Origin (locus) |
D. ananassae
|
|---|
| Node of Origin (family) |
D. ananassae
|
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Genome context
(Dana_caf1) |
scaffold_12903: 534990-535045 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
AUAUUAAAUAUUACUUAGUCUCUUUUCAUUUACUUUGAGUAAUGUUUGUAUUGUAUUUUCUAAAUACAUUCUUUAUUCCAAGUAGAUGAAGUGAUUUUCGAUCAUCAGUUGAAAUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUAUUAAAUAUUACUUAGUC--| U U UGUU GUAU
UC UUUCAUUUACUU GAGUAA UGUAUU U
AG GAAGUAGAUGAA CUUAUU ACAUAA U
AUAAAGUUGACUACUAGCUUUU^ U C UCUU AUCU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Mature sequence |
Dan-Novel-18_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UACUUUGAGUAAUGUUUGUAUU -22
Get sequence
|
|---|
| Co-mature sequence |
Dan-Novel-18_3p |
| mirBase accession | None |
|---|
| Sequence |
34- UACAUUCUUUAUUCCAAGUAGA -56
Get sequence
|
|---|
