MirGeneDB ID | Dan-Novel-20 |
Family name |
DAN-NOVEL-20 (all species) |
Seed |
AAGCGCU |
Species |
Fruit fly (Drosophila ananassae) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
D. ananassae
|
Node of Origin (family) |
D. ananassae
|
Genome context (Dana_caf1) |
scaffold_12903: 550138-550198 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UAAAGGAUAACCCCCAGAUAAGUGUAGUACUCCUAGUGGUAGAGACGGCUUAUAUUUUUUCAUCCAUAUAAGCGCUCUAACCACUAGAAGAUACUCUGCUUAUAGAGUCUUCAGGAUCUUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UAAAGGAUAACCCCCAG- GU - C -| A G UUUUU
AUAAGU AGUA CU CUAGUGG UAGAG CG CUUAUA U
UAUUCG UCAU GA GAUCACC AUCUC GC GAAUAU C
CUUCUAGGACUUCUGAGA UC A A A^ - - ACCUA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Dan-Novel-20_5p* |
mirBase accession | None |
Sequence |
0- UCCUAGUGGUAGAGACGGCUUAUA -24
Get sequence
|
Mature sequence |
Dan-Novel-20_3p |
mirBase accession | None |
Sequence |
38- UAAGCGCUCUAACCACUAGAAGA -61
Get sequence
|