MirGeneDB ID | Dan-Novel-5 |
Family name |
DAN-NOVEL-5 (all species) |
Seed |
GUAGAAG |
Species |
Fruit fly (Drosophila ananassae) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
D. ananassae
|
Node of Origin (family) |
D. ananassae
|
Genome context (Dana_caf1) |
scaffold_12903: 550549-550607 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UAAUAAUUCUUGGAGUAUUAUCUAAUUAUCAGUAGAAGCCAAAAGGAUGUGAGUAUUUUUGAAAUCCACCUCCCUUUGGCUUCUACUACUUAAUUGGUAAUCAAAACUGCUUCAAAAAC
Get precursor sequence
|
Structure | 10 20 30 40 50
UAAUAAUUCUUGGAGUA--| U UC- A U AGUAUUU
UUA CUAAUUA AGUAGAAGCCAAA GGA GUG \
AAU GGUUAAU UCAUCUUCGGUUU CCU CAC U
CAAAAACUUCGUCAAAACU^ - UCA C C CUAAAGU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Dan-Novel-5_5p |
mirBase accession | None |
Sequence |
0- AGUAGAAGCCAAAAGGAUGUG -21
Get sequence
|
Star sequence |
Dan-Novel-5_3p* |
mirBase accession | None |
Sequence |
38- CCUCCCUUUGGCUUCUACUAC -59
Get sequence
|