| MirGeneDB ID | Dlo-Mir-6001 |
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| Family name |
MIR-6001 (all species) |
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| Seed |
UCUCUUU |
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| Species |
Braconid wasp (Diachasmimorpha longicaudata) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
D. longicaudata
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| Node of Origin (family) |
D. longicaudata
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Genome context
(GCF_034640455.1_iyDiaLong2_genomic) |
NC_087229.1: 6688216-6688286 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GCCCCAUCAGGAAUGAUGAAACCAAUUGAGGUAGGUAACAACUGAUGGGAACAUUUUGUUCUCCAAAUUGAUCUAAUGUUCUCUUUGGUUGUUACCACCAGAACUGAAUUGAUUAAUGGAGCUUAGAGCAG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GCCCCAUCAGGAAUGAUGAAAC G -----| A UG U UUUUGUUCUCC
CAAUU A GGU GGUAACAAC A GGGAACA \
GUUAA U CCA CCAUUGUUG U CUCUUGU A
GACGAGAUUCGAGGUAAUUA-- G CAAGA^ - GU U AAUCUAGUUAA
. 120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
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| Star sequence |
Dlo-Mir-6001_5p* |
| mirBase accession | None |
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| Sequence |
0- GUAGGUAACAACUGAUGGGAACA -23
Get sequence
|
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| Mature sequence |
Dlo-Mir-6001_3p |
| mirBase accession | None |
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| Sequence |
48- UUCUCUUUGGUUGUUACCACCAG -71
Get sequence
|
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