| MirGeneDB ID | Dlo-Mir-6039 |
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| Family name |
MIR-6039 (all species) |
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| Seed |
AUCGAAC |
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| Species |
Braconid wasp (Diachasmimorpha longicaudata) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
D. longicaudata
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| Node of Origin (family) |
D. longicaudata
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Genome context
(GCF_034640455.1_iyDiaLong2_genomic) |
NC_087235.1: 3739531-3739594 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AGUGGAAACAAGACCGGGAUCAAUGCUCUAGAUCGAACCCGUGAGUUUACGUGGGACAAAUUUAGGCAAACGUAGACCUACGUGUUAGACCUUAGAGUGUGAUCCGUGACCAUCAAAUUUGCGG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AGUGGAAACAAGACCGG---| A A- G C A GGGACAAA
GAUCA UGCUCUAG UC AAC CGUG GUUUACGU \
CUAGU GUGAGAUU AG UUG GCAU CAGAUGCA U
GGCGUUUAAACUACCAGUGC^ - CC A U C AACGGAUU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Dicer cut -1 on both arms. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Dlo-Mir-6039_5p |
| mirBase accession | None |
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| Sequence |
0- GAUCGAACCCGUGAGUUUACGU -22
Get sequence
|
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| Star sequence |
Dlo-Mir-6039_3p* |
| mirBase accession | None |
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| Sequence |
41- GUAGACCUACGUGUUAGACCUUA -64
Get sequence
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