| MirGeneDB ID | Dme-Mir-2501 |
|---|
| Family name |
MIR-2501 (all species) |
|---|
| Seed |
UAAGUUU |
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| Species |
Fruit fly (Drosophila melanogaster) |
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| MiRBase ID |
dme-mir-2501
|
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| Paralogues |
|
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| Orthologues |
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| Node of Origin (locus) |
D. melanogaster
|
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| Node of Origin (family) |
D. melanogaster
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Genome context
(Drosophila_melanogaster_BDGP6) |
3L: 8111107-8111173 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CACUUUUGGCAAGCGGGUGGUAAAAGUGGAGUAAGUUUGGAGUGCCUGGGCUAAGAACUUCCAUUCUGAAACUUAACUCUUGCAAUCAAACUUUCUUUCAGAACCAAGCGUGGCAGGCAGAAGCCCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CACUUUUGGCAAGCGGG----| AAAAGU U AG CU CUAAGAACUUCC
UGGU GGAG AAGUUUGG UGC GGG A
ACCA UUUC UUCAAACU ACG CUC U
ACCCGAAGACGGACGGUGCGA^ AGAC-- U A- UU AAUUCAAAGUCU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
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Tissue expression
|
|
|---|
| Mature sequence |
Dme-Mir-2501_5p |
| mirBase accession | MIMAT0012216 |
|---|
| Sequence |
0- GUAAGUUUGGAGUGCCUGGGCUA -23
Get sequence
|
|---|
| Proposed targets |
microrna.org: MIMAT0012216
|
|---|
| Star sequence |
Dme-Mir-2501_3p* |
| mirBase accession | MIMAT0012217 |
|---|
| Sequence |
45- ACUCUUGCAAUCAAACUUUCUU -67
Get sequence
|
|---|
| Proposed targets |
microrna.org: MIMAT0012217
|
|---|
