MirGeneDB ID | Dme-Mir-9388 |
Family name |
MIR-9388 (all species) |
Seed |
GUAGUAC |
Species |
Fruit fly (Drosophila melanogaster) |
MiRBase ID |
dme-mir-9388
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
D. melanogaster
|
Node of Origin (family) |
D. melanogaster
|
Genome context (Drosophila_melanogaster_BDGP6) |
3L: 22945131-22945192 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCAAGAAACGCUAUCCAAGUAUUUUGGUACGUAUGUAUGUAUGUACAUACAUGUGUAUAUGGUACAUUCAUGUAGUACAUACAUACAUAUGUAUGCAAGUACGUACGAACGCUCGACAAUUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CCAAGAAACGCUAUCCAA--| UG A UGUAUAU
GUAUUU GUACGUAUGUAUGUAUGUAC UACAUG \
CAUGAA UAUGUAUACAUACAUACAUG AUGUAC G
CUUAACAGCUCGCAAGCAUG^ CG - UUACAUG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
|
|
Star sequence |
Dme-Mir-9388_5p* |
mirBase accession | MIMAT0035238 |
Sequence |
0- GUAUGUAUGUAUGUACAUACAUG -23
Get sequence
|
Mature sequence |
Dme-Mir-9388_3p |
mirBase accession | MIMAT0035239 |
Sequence |
40- UGUAGUACAUACAUACAUAUGU -62
Get sequence
|