MirGeneDB 3.0

MirGeneDB ID

Dme-Mir-9388

Family name MIR-9388 (all species)
Seed GUAGUAC
Species Fruit fly (Drosophila melanogaster)
MiRBase ID dme-mir-9388
Paralogues
Orthologues
Node of Origin (locus) D. melanogaster
Node of Origin (family) D. melanogaster
Genome context
(Drosophila_melanogaster_BDGP6)
3L: 22945131-22945192 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCAAGAAACGCUAUCCAAGUAUUUUGGUACGUAUGUAUGUAUGUACAUACAUGUGUAUAUGGUACAUUCAUGUAGUACAUACAUACAUAUGUAUGCAAGUACGUACGAACGCUCGACAAUUC
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Structure
        10          20        30        40        50        60 
CCAAGAAACGCUAUCCAA--|     UG                    A      UGUAUAU 
                    GUAUUU  GUACGUAUGUAUGUAUGUAC UACAUG       \
                    CAUGAA  UAUGUAUACAUACAUACAUG AUGUAC       G
CUUAACAGCUCGCAAGCAUG^     CG                    -      UUACAUG 
120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Bo He He La Ov Sa Wh
Star sequence

Dme-Mir-9388_5p*

mirBase accessionMIMAT0035238
Sequence
0- GUAUGUAUGUAUGUACAUACAUG -23
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Mature sequence

Dme-Mir-9388_3p

mirBase accessionMIMAT0035239
Sequence
40- UGUAGUACAUACAUACAUAUGU -62
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