| MirGeneDB ID | Dmo-Mir-9538 |
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| Family name |
MIR-9538 (all species) |
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| Seed |
GAGAUCA |
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| Species |
Fruit fly (Drosophila mojavensis) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
D. mojavensis
|
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| Node of Origin (family) |
D. mojavensis
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Genome context
(Dmoj_caf1) |
scaffold_6540: 6630127-6630196 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AAUAACUCAGCCCUUCACGAUUGGGCUGCGAGUUAUUCUUGCUGUUGUCUCAUCUUAGAUAUCGUUCUGCUUGAAGGAUGAGAUCAGUCAGAAUAACUCGCAGCUCAAUUGAUAAGCAACAAGAUUUUUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AAUAACUCAGCCCUUCA--| U UU UUAGAUAUCG
CGAUUGGGCUGCGAGUUAUUCU GCUG GUCUCAUC U
GUUAACUCGACGCUCAAUAAGA UGAC UAGAGUAG U
UUUUUUAGAACAACGAAUA^ C -- GAAGUUCGUC
. 120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | Although Mir-9538 shares the same seed sequence with Bantam, the pre-miRNA sequences are different enough to warrant the recognition of a distinct Mir-9538 family. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
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| Star sequence |
Dmo-Mir-9538_5p* |
| mirBase accession | None |
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| Sequence |
0- AGUUAUUCUUGCUGUUGUCUCAUC -24
Get sequence
|
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| Mature sequence |
Dmo-Mir-9538_3p |
| mirBase accession | None |
|---|
| Sequence |
48- UGAGAUCAGUCAGAAUAACUCG -70
Get sequence
|
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