| MirGeneDB ID | Ebu-Mir-15-P1e |
|---|
| Family name |
MIR-15 (all species) |
|---|
| Seed |
AGCAGCA |
|---|
| Species |
Inshore hagfish (Eptatretus burgeri) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Ebu-Mir-15-P2f
|
|---|
| Orthologues |
Cin-Mir-15-P1
|
|---|
| Node of Origin (locus) |
E. burgeri
|
|---|
| Node of Origin (family) |
Olfactores
|
|---|
Genome context
(Eburgeri_3) |
FYBX02009928.1: 3667616-3667677 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GAGUACACCGGAGACUGCCGGGUUUCCCUGUAGCAGCACGUCAUGGUUUGUAAAGAGGCGGAGGCAGUUGCAGGCCUGGCGCUGCUGCCUCGGGGCAGCUUGGCUUAUCAACACUCGGUGAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GAGUACACCGGAGACUG-- U UA -| U AAGAGGC
CCGGGUU CCCUG GCAGCA CGUCA GGUUUGUA G
GGUUCGA GGGGC CGUCGU GCGGU CCGGACGU G
AAGUGGCUCACAACUAUUC C UC C^ - UGACGGA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Ebu-Mir-15-P1e_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UAGCAGCACGUCAUGGUUUGUA -22
Get sequence
|
|---|
| Star sequence |
Ebu-Mir-15-P1e_3p* |
| mirBase accession | None |
|---|
| Sequence |
40- CAGGCCUGGCGCUGCUGCCUCG -62
Get sequence
|
|---|
