| MirGeneDB ID | Ebu-Mir-203-P3 |
|---|
| Family name |
MIR-203 (all species) |
|---|
| Seed |
GAAAUGU |
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| Species |
Inshore hagfish (Eptatretus burgeri) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Ebu-Mir-203-P4
|
|---|
| Orthologues |
Lch-Mir-203
Pma-Mir-203-o3-v1
Pma-Mir-203-o3-v2
Spt-Mir-203
|
|---|
| Node of Origin (locus) |
E. burgeri
|
|---|
| Node of Origin (family) |
Vertebrata
|
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Genome context
(Eburgeri_3) |
FYBX02006070.1: 702849-702910 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UGGGAAUGUUCGUGUCAGGUUUUUCCAUCCAGUGGUUCUAAUCAGUUCACAAUGUUCUGAUAUGACGAUGUGAAAUGUUUAGGACCACUAUGAUGGUUGAACUACGUACACCAAUCGGAGCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGGGAAUGUUCGUGUCA-- UU C-| U G AUGUUCUG
GGUUU CCAUC AGUGGUUCUAA CA UUCACA \
UCAAG GGUAG UCACCAGGAUU GU AAGUGU A
ACGAGGCUAACCACAUGCA UU UA^ U A AGCAGUAU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Yes
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Ebu-Mir-203-P3_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- AGUGGUUCUAAUCAGUUCACA -21
Get sequence
|
|---|
| Mature sequence |
Ebu-Mir-203-P3_3p |
| mirBase accession | None |
|---|
| Sequence |
40- UGAAAUGUUUAGGACCACUAUG -62
Get sequence
|
|---|
