| MirGeneDB ID | Ebu-Novel-1 |
|---|
| Family name |
EBU-NOVEL-1 (all species) |
|---|
| Seed |
GAUGGAA |
|---|
| Species |
Inshore hagfish (Eptatretus burgeri) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
E. burgeri
|
|---|
| Node of Origin (family) |
E. burgeri
|
|---|
Genome context
(Eburgeri_3) |
FYBX02010348.1: 152022-152080 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UCGUCUCGUCCAGAUGUCAGAAUACCGUGAAGGUUCGGGUCCAUUCCAUCAGCUCAGUUUUGGUUGUUGAUGGAAAGCUCCGAGUCUCCUCGUUCUCUCUGUCUCUCGUCGAUCAGUUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UCGUCUCGUCCAGAUGU- AUAC- UGA GU -| CCA UCAGU
CAGA CG AG UCGG GU UUCCAUCAGC U
GUCU GC UC AGCC CG AAGGUAGUUG U
GUUGACUAGCUGCUCUCU CUCUU UCC UG U^ A-- UUGGU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Ebu-Novel-1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGGUUCGGGUCCAUUCCAUCAGC -23
Get sequence
|
|---|
| Mature sequence |
Ebu-Novel-1_3p |
| mirBase accession | None |
|---|
| Sequence |
37- UGAUGGAAAGCUCCGAGUCUCC -59
Get sequence
|
|---|
