MirGeneDB ID | Eca-Mir-7177 |
Family name |
MIR-7177 (all species) |
Seed |
AAUGGUC |
Species |
Horse (Equus caballus) |
MiRBase ID |
eca-mir-7177b
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
E. caballus
|
Node of Origin (family) |
E. caballus
|
Genome context (GCA_002863925.1_EquCab3.0) |
CM009160.1: 16445430-16445497 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCUCAUCCAUACGAAGUGAUUAGUUUCUCCAGGGCACUAGGAGACCACUUGGUAAAUUACUUUAACCAAGCACUCUAAAUGGUCCCCUAGUGCUCUGGGAAAGUUAAUCUCAUUCACCUUCCAUGGAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GCUCAUCCAUACGAAGU--| GU CU A C UAAAUUACUU
GAUUA UU CCAGGGCACUAGG GACCA UUGG U
CUAAU AA GGUCUCGUGAUCC CUGGU AAUC A
AAGGUACCUUCCACUUACU^ UG AG C A UCACGAACCA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Star sequence |
Eca-Mir-7177_5p* |
mirBase accession | None |
Sequence |
0- AGGGCACUAGGAGACCACUUGG -22
Get sequence
|
Mature sequence |
Eca-Mir-7177_3p |
mirBase accession | MIMAT0034691 |
Sequence |
46- AAAUGGUCCCCUAGUGCUCUGG -68
Get sequence
|