MirGeneDB 3.0

MirGeneDB ID

Eca-Mir-9143

Family name MIR-9143 (all species)
Seed AGACAAA
Species Horse (Equus caballus)
MiRBase ID eca-mir-9143
Paralogues
Orthologues
Node of Origin (locus) E. caballus
Node of Origin (family) E. caballus
Genome context
(GCA_002863925.1_EquCab3.0)
CM009179.1: 119846646-119846702 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUCCUCUUUGGUUGGUACAUUUGACCCUGAAGACAAAUCUAUGAUGCAGAUGUAAUCAUAUUCUCUGCACCGUAGGUUUGUUGUCAGGGUUAAAUGGGCUACUUUACAUGGAAGCA
Get precursor sequence
Structure
        10          20        30        40        50        
UUUCCUCUUUGGUUGGUA--|            A            A      UGUAAU 
                    CAUUUGACCCUGA GACAAAUCUAUG UGCAGA      \
                    GUAAAUUGGGACU UUGUUUGGAUGC ACGUCU      C
ACGAAGGUACAUUUCAUCGG^            G            C      CUUAUA 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-9143_5p

mirBase accessionNone
Sequence
0- AAGACAAAUCUAUGAUGCAGA -21
Get sequence
Star sequence

Eca-Mir-9143_3p*

mirBase accessionMIMAT0034716
Sequence
36- UGCACCGUAGGUUUGUUGUCA -57
Get sequence