| MirGeneDB ID | Eca-Novel-1 |
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| Family name |
ECA-NOVEL-1 (all species) |
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| Seed |
AGCUGGC |
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| Species |
Horse (Equus caballus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
E. caballus
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| Node of Origin (family) |
E. caballus
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Genome context
(GCA_002863925.1_EquCab3.0) |
CM009171.1: 46562614-46562682 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UCCCAGAAGGGCUGCGGGAGUGCGGGGAGGGAGCUGGCUCGGCUGUGGCUGGCAUCCCCUCCGCCCGGGCACACCCAGCCAGGCUCGGGGCCAGCGCCCUCCCCGUGGGCCUCCCUUCAGCAGAGCCAG
Get precursor sequence
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| Structure | 10 20 30 40 50 60
UCCCAGAAGGGCUGCGG-- AG A --| G CAUCCCCUCC
G UGCGGGGAGGG GCUGGCUC GGCU UGGCUGG G
C GUGCCCCUCCC CGACCGGG UCGG ACCGACC C
GACCGAGACGACUUCCCUC GG G GC^ - CACACGGGCC
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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| Mature sequence |
Eca-Novel-1_5p |
| mirBase accession | None |
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| Sequence |
0- GAGCUGGCUCGGCUGUGGCUGG -22
Get sequence
|
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| Star sequence |
Eca-Novel-1_3p* |
| mirBase accession | None |
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| Sequence |
46- AGCCAGGCUCGGGGCCAGCGCCC -69
Get sequence
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