| MirGeneDB ID | Eca-Novel-1 |
|---|---|
| Family name | ECA-NOVEL-1 (all species) |
| Seed | AGCUGGC |
| Species | Horse (Equus caballus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | |
| Node of Origin (locus) | E. caballus |
| Node of Origin (family) | E. caballus |
| Genome context (GCA_002863925.1_EquCab3.0) |
CM009171.1: 46562614-46562682 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UCCCAGAAGGGCUGCGGGAGUGCGGGGAGGGAGCUGGCUCGGCUGUGGCUGGCAUCCCCUCCGCCCGGGCACACCCAGCCAGGCUCGGGGCCAGCGCCCUCCCCGUGGGCCUCCCUUCAGCAGAGCCAGGet precursor sequence |
| Structure | 10 20 30 40 50 60 UCCCAGAAGGGCUGCGG-- AG A --| G CAUCCCCUCC G UGCGGGGAGGG GCUGGCUC GGCU UGGCUGG G C GUGCCCCUCCC CGACCGGG UCGG ACCGACC C GACCGAGACGACUUCCCUC GG G GC^ - CACACGGGCC 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Eca-Novel-1_5p |
| mirBase accession | None |
| Sequence |
0- GAGCUGGCUCGGCUGUGGCUGG -22
Get sequence
|
| Star sequence | Eca-Novel-1_3p* |
| mirBase accession | None |
| Sequence |
46- AGCCAGGCUCGGGGCCAGCGCCC -69
Get sequence
|
