MirGeneDB 3.0

MirGeneDB ID

Eca-Novel-2

Family name ECA-NOVEL-2 (all species)
Seed UCCCUCC
Species Horse (Equus caballus)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) E. caballus
Node of Origin (family) E. caballus
Genome context
(GCA_002863925.1_EquCab3.0)
CM009154.1: 27764893-27764956 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCGUGUCCUGGAGCUUGGGUCAUGGCUGCCUUCCCUCCAGUGUGGGACUGAUUUGGCUUUUUCUGCGAUGAGUCAGGAACUCCUGGAGGGAUGAGGGCUCUGGCCCCGCCCAGCAGUGGCCUCA
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Structure
        10          20        30        40         50        60  
CCGUGUCCUGGAGCUUG--     U    GCCU         U-| GGGA      UGGCUUUU 
                   GGUCA GGCU    UCCCUCCAG  GU    CUGAUU        \
                   CCGGU UCGG    AGGGAGGUC  CA    GACUGA        U
ACUCCGGUGACGACCCGCC     C    GAGU         CU^ AG--      GUAGCGUC 
  120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Novel-2_5p

mirBase accessionNone
Sequence
0- UUCCCUCCAGUGUGGGACUGAUU -23
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Star sequence

Eca-Novel-2_3p*

mirBase accessionNone
Sequence
42- UCAGGAACUCCUGGAGGGAUGA -64
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