MirGeneDB ID | Eca-Novel-2 |
Family name |
ECA-NOVEL-2 (all species) |
Seed |
UCCCUCC |
Species |
Horse (Equus caballus) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
E. caballus
|
Node of Origin (family) |
E. caballus
|
Genome context (GCA_002863925.1_EquCab3.0) |
CM009154.1: 27764893-27764956 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCGUGUCCUGGAGCUUGGGUCAUGGCUGCCUUCCCUCCAGUGUGGGACUGAUUUGGCUUUUUCUGCGAUGAGUCAGGAACUCCUGGAGGGAUGAGGGCUCUGGCCCCGCCCAGCAGUGGCCUCA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CCGUGUCCUGGAGCUUG-- U GCCU U-| GGGA UGGCUUUU
GGUCA GGCU UCCCUCCAG GU CUGAUU \
CCGGU UCGG AGGGAGGUC CA GACUGA U
ACUCCGGUGACGACCCGCC C GAGU CU^ AG-- GUAGCGUC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Eca-Novel-2_5p |
mirBase accession | None |
Sequence |
0- UUCCCUCCAGUGUGGGACUGAUU -23
Get sequence
|
Star sequence |
Eca-Novel-2_3p* |
mirBase accession | None |
Sequence |
42- UCAGGAACUCCUGGAGGGAUGA -64
Get sequence
|