| MirGeneDB ID | Eca-Novel-3 |
|---|
| Family name |
ECA-NOVEL-3 (all species) |
|---|
| Seed |
UCCCUCC |
|---|
| Species |
Horse (Equus caballus) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
E. caballus
|
|---|
| Node of Origin (family) |
E. caballus
|
|---|
Genome context
(GCA_002863925.1_EquCab3.0) |
CM009154.1: 27764893-27764956 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CCGUGUCCUGGAGCUUGGGUCAUGGCUGCCUUCCCUCCAGUGUGGGACUGAUUUGGCUUUUUCUGCGAUGAGUCAGGAACUCCUGGAGGGAUGAGGGCUCUGGCCCCGCCCAGCAGUGGCCUCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CCGUGUCCUGGAGCUUG-- U GCCU U-| GGGA UGGCUUUU
GGUCA GGCU UCCCUCCAG GU CUGAUU \
CCGGU UCGG AGGGAGGUC CA GACUGA U
ACUCCGGUGACGACCCGCC C GAGU CU^ AG-- GUAGCGUC
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Eca-Novel-3_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UUCCCUCCAGUGUGGGACUGAUU -23
Get sequence
|
|---|
| Star sequence |
Eca-Novel-3_3p* |
| mirBase accession | None |
|---|
| Sequence |
42- UCAGGAACUCCUGGAGGGAUGA -64
Get sequence
|
|---|
