MirGeneDB 3.0

MirGeneDB ID

Eca-Novel-3

Family name ECA-NOVEL-3 (all species)
Seed GGCUCAG
Species Horse (Equus caballus)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) E. caballus
Node of Origin (family) E. caballus
Genome context
(GCA_002863925.1_EquCab3.0)
CM009167.1: 37824427-37824482 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUUGAGUCCAUGACGCCAACUGUGAUACCAGGCUCAGGACACGUGGACUGACAUUAAAGGCCCAAGGACACAUGCCCUGAGCUGGAACCCGAGAAGGGGGUUGGGCAGGGGCAGU
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Structure
        10        20          30        40        50        
GCUUGAGUCCAUGACGCCAACUGUGAUA--|   G      A  C   GA  GACAUUA 
                              CCAG CUCAGG CA GUG  CU       \
                              GGUC GAGUCC GU CAC  GA       A
UGACGGGGACGGGUUGGGGGAAGAGCCCAA^   -      C  A   AG  ACCCGGA 
    110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Novel-3_5p

mirBase accessionNone
Sequence
0- AGGCUCAGGACACGUGGACUGA -22
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Co-mature sequence

Eca-Novel-3_3p

mirBase accessionNone
Sequence
35- AGGACACAUGCCCUGAGCUGG -56
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