MirGeneDB 3.0

MirGeneDB ID

Eca-Novel-4

Family name ECA-NOVEL-4 (all species)
Seed CUUCCCA
Species Horse (Equus caballus)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) E. caballus
Node of Origin (family) E. caballus
Genome context
(GCA_002863925.1_EquCab3.0)
CM009156.1: 81175483-81175542 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGUUUGAAACUACCCUGGGGUUCCCCCCUCUCUUCCCACCUACCUCUCUGCUGGGUCUGUUCUUUCCCUGGAGAGGAGGAUGGGAAGUGAAUGGAGCCCAGGCCCAGCACAGGCCCCUAC
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Structure
        10            20        30         40        50         
GGUUUGAAACUACCCUG----|      CCCC  U       -   A       GCUGGGUCU 
                     GGGUUCC    UC CUUCCCA CCU CCUCUCU         G
                     CCCGAGG    AG GAAGGGU GGA GGAGAGG         U
CAUCCCCGGACACGACCCGGA^      UA--  U       A   -       UCCCUUUCU 
.       110       100          90        80         70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Novel-4_5p

mirBase accessionNone
Sequence
0- UCUUCCCACCUACCUCUCUGCUG -23
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Star sequence

Eca-Novel-4_3p*

mirBase accessionNone
Sequence
38- UGGAGAGGAGGAUGGGAAGUGA -60
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