MirGeneDB ID | Eca-Novel-6 |
Family name |
ECA-NOVEL-6 (all species) |
Seed |
GGGCCAC |
Species |
Horse (Equus caballus) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
E. caballus
|
Node of Origin (family) |
E. caballus
|
Genome context (GCA_002863925.1_EquCab3.0) |
CM009169.1: 50627251-50627308 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGGGAGGACUCCACCGUGUGGUGCCUCAGGUGGGCCACCUGGAGUCAGGAAGCAUCCCCCAAAGCACCUGGAUUCCUGGGGCUCCGGCCUGAUGCAGCUCGAGUGCUCCAGGGUGAGU
Get precursor sequence
|
Structure | 10 20 30 40 50
GGGGAGGACUCCACCGUGUGG- C - -| A U - AAGCAUCC
UGC UCAGG UGG GCC CC GGAGUC AGG \
ACG AGUCC GCC CGG GG CCUUAG UCC C
UGAGUGGGACCUCGUGAGCUCG U G U^ - U G ACGAAACC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Eca-Novel-6_5p |
mirBase accession | None |
Sequence |
0- UGGGCCACCUGGAGUCAGGAAG -22
Get sequence
|
Co-mature sequence |
Eca-Novel-6_3p |
mirBase accession | None |
Sequence |
35- ACCUGGAUUCCUGGGGCUCCGGC -58
Get sequence
|