| MirGeneDB ID | Eca-Novel-7 |
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| Family name |
ECA-NOVEL-7 (all species) |
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| Seed |
GGGCCAC |
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| Species |
Horse (Equus caballus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
E. caballus
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| Node of Origin (family) |
E. caballus
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Genome context
(GCA_002863925.1_EquCab3.0) |
CM009169.1: 50627251-50627308 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GGGGAGGACUCCACCGUGUGGUGCCUCAGGUGGGCCACCUGGAGUCAGGAAGCAUCCCCCAAAGCACCUGGAUUCCUGGGGCUCCGGCCUGAUGCAGCUCGAGUGCUCCAGGGUGAGU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GGGGAGGACUCCACCGUGUGG- C - -| A U - AAGCAUCC
UGC UCAGG UGG GCC CC GGAGUC AGG \
ACG AGUCC GCC CGG GG CCUUAG UCC C
UGAGUGGGACCUCGUGAGCUCG U G U^ - U G ACGAAACC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
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| Mature sequence |
Eca-Novel-7_5p |
| mirBase accession | None |
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| Sequence |
0- UGGGCCACCUGGAGUCAGGAAG -22
Get sequence
|
|---|
| Co-mature sequence |
Eca-Novel-7_3p |
| mirBase accession | None |
|---|
| Sequence |
35- ACCUGGAUUCCUGGGGCUCCGGC -58
Get sequence
|
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