MirGeneDB 3.0

MirGeneDB ID

Eca-Novel-7

Family name ECA-NOVEL-7 (all species)
Seed CACCACU
Species Horse (Equus caballus)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) E. caballus
Node of Origin (family) E. caballus
Genome context
(GCA_002863925.1_EquCab3.0)
CM009148.1: 27313860-27313922 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUGAAGCAGAUCACACGAACUUAACUGCUACACCACUGGACCGGCCCGUUAAUAUUUCUUCUUAAAGAUAAGGGGCUGACCCAAUGGCACAGUGGUUGAGUUUGCAGUUGCCAGUGUUUAUG
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Structure
        10          20        30        40        50        60 
CUUGAAGCAGAUCACAC--|        UG  ACA   C   AC      G   AUAUUUCU 
                   GAACUUAAC  CU   CCA UGG  CGGCCC UUA        \
                   UUUGAGUUG  GA   GGU ACC  GUCGGG AAU        U
GUAUUUGUGACCGUUGACG^        GU  CAC   A   CA      G   AGAAAUUC 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Novel-7_5p

mirBase accessionNone
Sequence
0- ACACCACUGGACCGGCCCGUUA -22
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Co-mature sequence

Eca-Novel-7_3p

mirBase accessionNone
Sequence
41- AGGGGCUGACCCAAUGGCACAG -63
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