| MirGeneDB ID | Eca-Novel-8 |
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| Family name |
ECA-NOVEL-8 (all species) |
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| Seed |
CACCACU |
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| Species |
Horse (Equus caballus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
E. caballus
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| Node of Origin (family) |
E. caballus
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Genome context
(GCA_002863925.1_EquCab3.0) |
CM009148.1: 27313860-27313922 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CUUGAAGCAGAUCACACGAACUUAACUGCUACACCACUGGACCGGCCCGUUAAUAUUUCUUCUUAAAGAUAAGGGGCUGACCCAAUGGCACAGUGGUUGAGUUUGCAGUUGCCAGUGUUUAUG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CUUGAAGCAGAUCACAC--| UG ACA C AC G AUAUUUCU
GAACUUAAC CU CCA UGG CGGCCC UUA \
UUUGAGUUG GA GGU ACC GUCGGG AAU U
GUAUUUGUGACCGUUGACG^ GU CAC A CA G AGAAAUUC
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
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| Mature sequence |
Eca-Novel-8_5p |
| mirBase accession | None |
|---|
| Sequence |
0- ACACCACUGGACCGGCCCGUUA -22
Get sequence
|
|---|
| Co-mature sequence |
Eca-Novel-8_3p |
| mirBase accession | None |
|---|
| Sequence |
41- AGGGGCUGACCCAAUGGCACAG -63
Get sequence
|
|---|
