| MirGeneDB ID | Efe-Mir-2686-o1 |
|---|
| Family name |
MIR-2686 (all species) |
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| Seed |
AGAUGUU |
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| Species |
Common brandling worm (Eisenia fetida) |
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| MiRBase ID |
|
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| Paralogues |
Efe-Mir-2686-o2
Efe-Mir-2686-o3
|
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| Orthologues |
Cte-Mir-2686-P1
|
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| Node of Origin (locus) |
E. fetida
|
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| Node of Origin (family) |
Sedentaria
|
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Genome context
(Efe_combined) |
Efet.01.385486: 2629-2688 [+]
|
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Precursor
(pre-Mir +30nt flank) |
ACGAGAUCCCCUUCAAGAGGUCACUGCGGGGCUUAUGUUAUAAACGUCUUCCUUGAUUUAGUAUCGGAAGAUGUUUUUAAUGUAGGCUUCCGCUGUGACACAGUUUCAACACAAUCAUCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
ACGAGAUCCCCUUCAAGAG-- U -| U UUGAUU
GUCAC GCGG GGCUUAUGUUA AAACGUCUUCC \
CAGUG CGCC UCGGAUGUAAU UUUGUAGAAGG U
UCUACUAACACAACUUUGACA U U^ U CUAUGA
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Efe-Mir-2686-o1_5p* |
| mirBase accession | None |
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| Sequence |
0- GCUUAUGUUAUAAACGUCUUCC -22
Get sequence
|
|---|
| Mature sequence |
Efe-Mir-2686-o1_3p |
| mirBase accession | None |
|---|
| Sequence |
37- AAGAUGUUUUUAAUGUAGGCUUC -60
Get sequence
|
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