| MirGeneDB ID | Efe-Novel-1 |
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| Family name |
EFE-NOVEL-1 (all species) |
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| Seed |
AAUUGUG |
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| Species |
Common brandling worm (Eisenia fetida) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
E. fetida
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| Node of Origin (family) |
E. fetida
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Genome context
(Efe_combined) |
Efet.01.153161: 835-895 [+]
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Precursor
(pre-Mir +30nt flank) |
CAUGGCAACGAAUUGUUUUAUUAGAAAGGGCAAUUGUGCUAAAGGUGAUUGUUUGUAGAUUCGCAAUUACAAUCCCCCUUACACAAUUUCUUUUGCUAAUAAACGGUCAACUAAAGUUCGG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CAUGGCAACGAAUUGUU-- -| C C A U UUGUAGA
UUAUUAG AAAGGG AAUUGUG UAA GG GAUUGU U
AAUAAUC UUUUCU UUAACAC AUU CC CUAACA U
GGCUUGAAAUCAACUGGCA G^ - - C C UUAACGC
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Dicer cut -1 on both arms. |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Mature sequence |
Efe-Novel-1_5p |
| mirBase accession | None |
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| Sequence |
0- CAAUUGUGCUAAAGGUGAUUGUU -23
Get sequence
|
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| Star sequence |
Efe-Novel-1_3p* |
| mirBase accession | None |
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| Sequence |
39- CAAUCCCCCUUACACAAUUUCU -61
Get sequence
|
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