| MirGeneDB ID | Efe-Novel-5 |
|---|
| Family name |
EFE-NOVEL-5 (all species) |
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| Seed |
AAAAGGU |
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| Species |
Common brandling worm (Eisenia fetida) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
E. fetida
|
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| Node of Origin (family) |
E. fetida
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Genome context
(Efe_combined) |
Efet.01.64621: 3288-3349 [-]
|
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Precursor
(pre-Mir +30nt flank) |
ACCAGUCGAAGUUUCAUUUGUUAUCAAGUCUAAAAGGUUCAGAUGCUAGGACAAUUAUGUUGGCAAGCGUUCUAUCUUCUGAACCUUUUGGACUUUAUGACCAGUUUUAUCUGCGACUAUAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
ACCAGUCGAAGUUUCAUUU--| C UGC AAUUAUG
GUUAU AAGUCUAAAAGGUUCAGA UAGGAC U
CAGUA UUCAGGUUUUCCAAGUCU AUCUUG U
GAUAUCAGCGUCUAUUUUGAC^ U UCU CGAACGG
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Mature sequence |
Efe-Novel-5_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UAAAAGGUUCAGAUGCUAGGAC -22
Get sequence
|
|---|
| Star sequence |
Efe-Novel-5_3p* |
| mirBase accession | None |
|---|
| Sequence |
40- UCUAUCUUCUGAACCUUUUGGA -62
Get sequence
|
|---|
