MirGeneDB ID | Egr-Mir-10293 |
Family name |
MIR-10293 (all species) |
Seed |
AAUUCGA |
Species |
Hydatid worm (Echinococcus granulosus) |
MiRBase ID |
egr-mir-10293
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
E. granulosus
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Node of Origin (family) |
E. granulosus
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Genome context (GCA_000524195.1_ASM52419v1_Egranulosus) |
APAU02000036.1: 266799-266856 [+]
UCSC
Ensembl
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Precursor (pre-Mir +30nt flank) |
UUAGUCAUGGUCCGCGCGGUGUGCAUCCAGGGGCUCGUUUACUCGAAUUGGUCUGCGUGGGGCACUAAUUCGAGUCAACAGGGUCGUUGCUGCGCACAUUUAACGCCUCUUUUAUCUC
Get precursor sequence
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Structure | 10 20 30 40 50
UUAGUCAUGGUCCGCGCG---| UC G - U CUGCG
GUGUGCA CAG GGCUC GUU ACUCGAAUUGGU \
CACGCGU GUU CUGGG CAA UGAGCUUAAUCA U
CUCUAUUUUCUCCGCAAUUUA^ C- G A C CGGGG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
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3' NTU |
No
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Motifs | CNNC at 3p(+17) |
Tissue expression
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Eg |
Eg |
Ev |
Ev |
Ad |
Fe |
Fe |
Hy |
Hy |
Hy |
Li |
Li |
Li |
Mi |
Mi |
Mi |
Po |
Po |
Po |
Po |
Po |
Po |
Po |
Pr |
Pr |
Pr |
Sm |
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Star sequence |
Egr-Mir-10293_5p* |
mirBase accession | MIMAT0041337 |
Sequence |
0- GGGCUCGUUUACUCGAAUUGGU -22
Get sequence
|
Mature sequence |
Egr-Mir-10293_3p |
mirBase accession | MIMAT0041338 |
Sequence |
35- UAAUUCGAGUCAACAGGGUCGUU -58
Get sequence
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