| MirGeneDB ID | Egr-Novel-1 |
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| Family name |
EGR-NOVEL-1 (all species) |
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| Seed |
ACGUGGU |
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| Species |
Hydatid worm (Echinococcus granulosus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
E. granulosus
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| Node of Origin (family) |
E. granulosus
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Genome context
(GCA_000524195.1_ASM52419v1_Egranulosus) |
APAU02000165.1: 53607-53674 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GUGAAAAUAAUAUCGCUGAAGCCCUUGUGCAACGUGGUCUUGGGUCGGUGGUCCGCUAUCGCAAUGCGACAGACUCUCGAUCCCGGCACUACGAUGCUCUCAGGGCGGCGGAGGCUGCAGCCCAGAAA
Get precursor sequence
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| Structure | 10 20 30 40 50 60
GUGAAAAUAAUAUCGCU-- AA UGU- A -| U GU CCGCUAUCG
G GCCCU GCA CGUGGU CU GGGUCG GGU C
C CGGGA CGU GCAUCA GG CCUAGC UCA A
AAAGACCCGACGUCGGAGG GG CUCU A C^ C UC GACAGCGUA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Er |
Er |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
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| Mature sequence |
Egr-Novel-1_5p |
| mirBase accession | None |
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| Sequence |
0- AACGUGGUCUUGGGUCGGUGGU -22
Get sequence
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| Co-mature sequence |
Egr-Novel-1_3p |
| mirBase accession | None |
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| Sequence |
44- UCUCGAUCCCGGCACUACGAUGCU -68
Get sequence
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