MirGeneDB 3.0

MirGeneDB ID

Egr-Novel-1

Family name EGR-NOVEL-1 (all species)
Seed ACGUGGU
Species Hydatid worm (Echinococcus granulosus)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) E. granulosus
Node of Origin (family) E. granulosus
Genome context
(GCA_000524195.1_ASM52419v1_Egranulosus)
APAU02000165.1: 53607-53674 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGAAAAUAAUAUCGCUGAAGCCCUUGUGCAACGUGGUCUUGGGUCGGUGGUCCGCUAUCGCAAUGCGACAGACUCUCGAUCCCGGCACUACGAUGCUCUCAGGGCGGCGGAGGCUGCAGCCCAGAAA
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Structure
        10          20         30         40        50        60  
GUGAAAAUAAUAUCGCU-- AA     UGU-   A      -| U      GU   CCGCUAUCG 
                   G  GCCCU    GCA CGUGGU CU GGGUCG  GGU         C
                   C  CGGGA    CGU GCAUCA GG CCUAGC  UCA         A
AAAGACCCGACGUCGGAGG GG     CUCU   A      C^ C      UC   GACAGCGUA 
      120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Eg Eg Ev Ev Ad Fe Fe Hy Hy Hy Li Li Li Mi Mi Mi Po Po Po Po Po Po Po Pr Pr Pr Sm
Mature sequence

Egr-Novel-1_5p

mirBase accessionNone
Sequence
0- AACGUGGUCUUGGGUCGGUGGU -22
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Co-mature sequence

Egr-Novel-1_3p

mirBase accessionNone
Sequence
44- UCUCGAUCCCGGCACUACGAUGCU -68
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