| MirGeneDB ID | Egr-Novel-2 |
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| Family name |
EGR-NOVEL-2 (all species) |
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| Seed |
GUAACGC |
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| Species |
Hydatid worm (Echinococcus granulosus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
E. granulosus
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| Node of Origin (family) |
E. granulosus
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Genome context
(GCA_000524195.1_ASM52419v1_Egranulosus) |
APAU02000016.1: 265656-265917 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AAAGUGGCGCCUCACCAGAACCGAGGGAUAAACCACUAUCGUAUUACAACUAGAGUACGGCGGGGCGCAUUGGUCUCCUAUUGCUUGGCCUUUGUACCUCUACGACACCUAUGCUGGUUUGAUUUUGACAUGCUUAUUUCUUGGAGCAAAUAAGUGAUGGGCACAAAUUUGGGAAAAGUCGGACGCAGGGUAUAUCUCUGGCUUGCGAGAUGUUAAGUGCUCCUCAGUAACGAAGUUAAAUCUAUCUGUUUGCCCUUAUCCAAAAGAGCUAUUGUAACGCGAUAGUGGUUUACCCCUCGGUAUUGGUGAGGCGCCAACAUUG
Get precursor sequence
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| Structure | 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160
AAAGUGGCGCCUCACCAGA--| A UA CUAGAGUACGGCGGGGCGCAUUGGUCUCCUAUUGCUUGGCCUUUGUACCUCUACGACACCUAUGCUGGUUUGAUUUUGACAUGCUUAUUUCUUGGAGCAAAUAAGUGAUG
ACCGAGGG UAAACCACUAUCG UUACAA G
UGGCUCCC AUUUGGUGAUAGC AAUGUU G
GUUACAACCGCGGAGUGGUUA^ C GC AUCGAGAAAACCUAUUCCCGUUUGUCUAUCUAAAUUGAAGCAAUGACUCCUCGUGAAUUGUAGAGCGUUCGGUCUCUAUAUGGGACGCAGGCUGAAAAGGGUUUAAACAC
320 310 300 290 280 270 260 250 240 230 220 210 200 190 180 170 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Er |
Er |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
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| Star sequence |
Egr-Novel-2_5p* |
| mirBase accession | None |
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| Sequence |
0- AACCACUAUCGUAUUACAAC -20
Get sequence
|
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| Mature sequence |
Egr-Novel-2_3p |
| mirBase accession | None |
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| Sequence |
242- UGUAACGCGAUAGUGGUUUA -262
Get sequence
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