MirGeneDB 3.0

MirGeneDB ID

Egr-Novel-2

Family name EGR-NOVEL-2 (all species)
Seed GUAACGC
Species Hydatid worm (Echinococcus granulosus)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) E. granulosus
Node of Origin (family) E. granulosus
Genome context
(GCA_000524195.1_ASM52419v1_Egranulosus)
APAU02000016.1: 265656-265917 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAGUGGCGCCUCACCAGAACCGAGGGAUAAACCACUAUCGUAUUACAACUAGAGUACGGCGGGGCGCAUUGGUCUCCUAUUGCUUGGCCUUUGUACCUCUACGACACCUAUGCUGGUUUGAUUUUGACAUGCUUAUUUCUUGGAGCAAAUAAGUGAUGGGCACAAAUUUGGGAAAAGUCGGACGCAGGGUAUAUCUCUGGCUUGCGAGAUGUUAAGUGCUCCUCAGUAACGAAGUUAAAUCUAUCUGUUUGCCCUUAUCCAAAAGAGCUAUUGUAACGCGAUAGUGGUUUACCCCUCGGUAUUGGUGAGGCGCCAACAUUG
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Structure
        10          20        30        40        50        60        70        80        90       100       110       120       130       140       150       160
AAAGUGGCGCCUCACCAGA--|       A             UA      CUAGAGUACGGCGGGGCGCAUUGGUCUCCUAUUGCUUGGCCUUUGUACCUCUACGACACCUAUGCUGGUUUGAUUUUGACAUGCUUAUUUCUUGGAGCAAAUAAGUGAUG 
                     ACCGAGGG UAAACCACUAUCG  UUACAA                                                                                                              G
                     UGGCUCCC AUUUGGUGAUAGC  AAUGUU                                                                                                              G
GUUACAACCGCGGAGUGGUUA^       C             GC      AUCGAGAAAACCUAUUCCCGUUUGUCUAUCUAAAUUGAAGCAAUGACUCCUCGUGAAUUGUAGAGCGUUCGGUCUCUAUAUGGGACGCAGGCUGAAAAGGGUUUAAACAC 
320       310       300       290       280       270       260       250       240       230       220       210       200       190       180       170
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Eg Eg Ev Ev Ad Fe Fe Hy Hy Hy Li Li Li Mi Mi Mi Po Po Po Po Po Po Po Pr Pr Pr Sm
Star sequence

Egr-Novel-2_5p*

mirBase accessionNone
Sequence
0- AACCACUAUCGUAUUACAAC -20
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Mature sequence

Egr-Novel-2_3p

mirBase accessionNone
Sequence
242- UGUAACGCGAUAGUGGUUUA -262
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