MirGeneDB 3.0

MirGeneDB ID

Egr-Novel-3

Family name EGR-NOVEL-3 (all species)
Seed UCGAGCA
Species Hydatid worm (Echinococcus granulosus)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) E. granulosus
Node of Origin (family) E. granulosus
Genome context
(GCA_000524195.1_ASM52419v1_Egranulosus)
APAU02000319.1: 8579-8837 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUGUUUUCAUGCAUCCACGUUGGGUUCAGGUGGUGUCCAUGCUUGCUUGCUUGUAUACGUAGGAAUUCGUAACGAGAAGUUACAACGCCAUGAUGGUACCACAUUCCGAUUACAAUUCUGAGUCAGGGCACGAUGCACCUGAAUCUCGAGAAUUGUUCCCUCGAAUAAAAAUCACUAAAGACAUCGUAUCUUCACUUAAAGUGUUAUUGAAAUGCGGUACCGUCAUGAUGUUAUAAUUUAUUGUUGUGCUUUCCUACGUAUGUACACGAUCGAGCACGGACACUAUCUAUUCCCAACGUGAAAGCGUCAAAUGGGCCU
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Structure
        10          20        30        40        50        60        70        80        90       100       110       120       130       140       150         
UGUGUUUUCAUGCAUCC--|       UUC           A      C   CUUGUAUACGUAGGAAUUCGUAACGAGAAGUUACAACGCCAUGAUGGUACCACAUUCCGAUUACAAUUCUGAGUCAGGGCACGAUGCACCUGAAUCUCGAGAAUUGUU 
                   ACGUUGGG   AGGUGGUGUCC UGCUUG UUG                                                                                                            \
                   UGCAACCC   UCUAUCACAGG ACGAGC AGC                                                                                                            C
UCCGGGUAAACUGCGAAAG^       UUA           C      U   ACAUGUAUGCAUCCUUUCGUGUUGUUAUUUAAUAUUGUAGUACUGCCAUGGCGUAAAGUUAUUGUGAAAUUCACUUCUAUGCUACAGAAAUCACUAAAAAUAAGCUCC 
       310       300       290       280       270       260       250       240       230       220       210       200       190       180       170       160
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Eg Eg Ev Ev Ad Fe Fe Hy Hy Hy Li Li Li Mi Mi Mi Po Po Po Po Po Po Po Pr Pr Pr Sm
Star sequence

Egr-Novel-3_5p*

mirBase accessionNone
Sequence
0- GUGGUGUCCAUGCUUGCUUG -20
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Mature sequence

Egr-Novel-3_3p

mirBase accessionNone
Sequence
239- AUCGAGCACGGACACUAUCU -259
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