MirGeneDB ID | Egr-Novel-4 |
Family name |
EGR-NOVEL-4 (all species) |
Seed |
CGGCGAA |
Species |
Hydatid worm (Echinococcus granulosus) |
MiRBase ID |
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
E. granulosus
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Node of Origin (family) |
E. granulosus
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Genome context (GCA_000524195.1_ASM52419v1_Egranulosus) |
APAU02000084.1: 320514-320585 [+]
UCSC
Ensembl
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Precursor (pre-Mir +30nt flank) |
CACACGCACAUCCACUGACAGGCGGAAGGGUCGGCGAAGGGGAGGCAGUGUGCGUGUGCGUGCGGUUGGGUUUCACAACCACCUUCCUCUUCUUCGUCUUCCCUUCCUGUCACUCUCAGCCUUUUUGAGUGG
Get precursor sequence
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Structure | 10 20 30 40 50 60
CACACGCACAUCCACUGACA- -| UC C U CGUGUGCGUGCGG
GGC GGAAGGG GGCGAAGGGGAGG AG GUG \
CUG CCUUCCC CUGCUUCUUCUCC UC CAC U
GGUGAGUUUUUCCGACUCUCA U^ UU U - CAACACUUUGGGU
130 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
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3' NTU |
No
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Motifs | UGUG in loop |
Tissue expression
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Eg |
Eg |
Ev |
Ev |
Ad |
Fe |
Fe |
Hy |
Hy |
Hy |
Li |
Li |
Li |
Mi |
Mi |
Mi |
Po |
Po |
Po |
Po |
Po |
Po |
Po |
Pr |
Pr |
Pr |
Sm |
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Mature sequence |
Egr-Novel-4_5p |
mirBase accession | None |
Sequence |
0- UCGGCGAAGGGGAGGCAGUGUGC -23
Get sequence
|
Co-mature sequence |
Egr-Novel-4_3p |
mirBase accession | None |
Sequence |
50- ACCUUCCUCUUCUUCGUCUUCC -72
Get sequence
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