| MirGeneDB ID | Egr-Novel-4 |
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| Family name |
EGR-NOVEL-4 (all species) |
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| Seed |
CGGCGAA |
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| Species |
Hydatid worm (Echinococcus granulosus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
E. granulosus
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| Node of Origin (family) |
E. granulosus
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Genome context
(GCA_000524195.1_ASM52419v1_Egranulosus) |
APAU02000084.1: 320514-320585 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CACACGCACAUCCACUGACAGGCGGAAGGGUCGGCGAAGGGGAGGCAGUGUGCGUGUGCGUGCGGUUGGGUUUCACAACCACCUUCCUCUUCUUCGUCUUCCCUUCCUGUCACUCUCAGCCUUUUUGAGUGG
Get precursor sequence
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| Structure | 10 20 30 40 50 60
CACACGCACAUCCACUGACA- -| UC C U CGUGUGCGUGCGG
GGC GGAAGGG GGCGAAGGGGAGG AG GUG \
CUG CCUUCCC CUGCUUCUUCUCC UC CAC U
GGUGAGUUUUUCCGACUCUCA U^ UU U - CAACACUUUGGGU
130 120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | UGUG in loop |
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Tissue expression
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| Er |
Er |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
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| Mature sequence |
Egr-Novel-4_5p |
| mirBase accession | None |
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| Sequence |
0- UCGGCGAAGGGGAGGCAGUGUGC -23
Get sequence
|
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| Co-mature sequence |
Egr-Novel-4_3p |
| mirBase accession | None |
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| Sequence |
50- ACCUUCCUCUUCUUCGUCUUCC -72
Get sequence
|
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