MirGeneDB 3.0

MirGeneDB ID

Egr-Novel-4

Family name EGR-NOVEL-4 (all species)
Seed CGGCGAA
Species Hydatid worm (Echinococcus granulosus)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) E. granulosus
Node of Origin (family) E. granulosus
Genome context
(GCA_000524195.1_ASM52419v1_Egranulosus)
APAU02000084.1: 320514-320585 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CACACGCACAUCCACUGACAGGCGGAAGGGUCGGCGAAGGGGAGGCAGUGUGCGUGUGCGUGCGGUUGGGUUUCACAACCACCUUCCUCUUCUUCGUCUUCCCUUCCUGUCACUCUCAGCCUUUUUGAGUGG
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Structure
        10        20          30        40        50        60      
CACACGCACAUCCACUGACA-   -|      UC             C  U   CGUGUGCGUGCGG 
                     GGC GGAAGGG  GGCGAAGGGGAGG AG GUG             \
                     CUG CCUUCCC  CUGCUUCUUCUCC UC CAC             U
GGUGAGUUUUUCCGACUCUCA   U^      UU             U  -   CAACACUUUGGGU 
130       120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Eg Eg Ev Ev Ad Fe Fe Hy Hy Hy Li Li Li Mi Mi Mi Po Po Po Po Po Po Po Pr Pr Pr Sm
Mature sequence

Egr-Novel-4_5p

mirBase accessionNone
Sequence
0- UCGGCGAAGGGGAGGCAGUGUGC -23
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Co-mature sequence

Egr-Novel-4_3p

mirBase accessionNone
Sequence
50- ACCUUCCUCUUCUUCGUCUUCC -72
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