| MirGeneDB ID | Emu-Mir-2014 |
|---|
| Family name |
MIR-2014 (all species) |
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| Seed |
AGAUUGG |
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| Species |
Muellers freshwater sponge (Ephydatia muelleri) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Aqu-Mir-2014-P1
Aqu-Mir-2014-P2
Aqu-Mir-2014-P3
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| Node of Origin (locus) |
Demospongiae
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| Node of Origin (family) |
Demospongiae
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Genome context
(GCA_013339895_Emu) |
JABACO010000010.1: 1205281-1205363 [+]
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Precursor
(pre-Mir +30nt flank) |
GGACAGAGGCGACGAGCAUGCAUUGCAUUGUAGAUUGGGCUUGGUCGGCAGGAAAAAAGCGAUGCUCCUCCUUCGAGGCGAUACCGCAUCCUGCCAAACAAGUCCGAUCUACAAGGUGUGCUUGCUCGCACCGCAAGGCGUGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60 70
GGACAGAGGCGACGAGCAU UU ----| GUC AAAAAAGCGAUGCUCCUC
GCA GCAU UGUAGAUUGGGCUUG GGCAGG \
CGU CGUG ACAUCUAGCCUGAAC CCGUCC C
AGUGCGGAACGCCACGCU- U- UGGA^ AAA UACGCCAUAGCGGAGCUU
140 130 120 110 100 90 80 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Emu-Mir-2014_5p |
| mirBase accession | None |
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| Sequence |
0- UAGAUUGGGCUUGGUCGGCAGG -22
Get sequence
|
|---|
| Star sequence |
Emu-Mir-2014_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
62- GCCAAACAAGUCCGAUCUACA -83
Get sequence
|
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