| MirGeneDB ID | Emu-Mir-2019 |
|---|
| Family name |
MIR-2019 (all species) |
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| Seed |
AAGUGAU |
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| Species |
Muellers freshwater sponge (Ephydatia muelleri) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Aqu-Mir-2019
|
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| Node of Origin (locus) |
Silicispongia
|
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| Node of Origin (family) |
Silicispongia
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Genome context
(GCA_013339895_Emu) |
JABACO010000009.1: 6363438-6363506 [-]
|
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Precursor
(pre-Mir +30nt flank) |
UACGAGUUUCCAGUGACGCCAGCGUGGUUCAAAGUGAUCGGGUUGCCGUCUGAGUACAAGGCCAUCAUGGCCUCUCACGCGGCAAGCUGCUCACUUCGAAACAACUGGCGCGCAGGAAAAAAACUGGAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UACGAGUUUCCAGUGAC---| CG G A U G C AGUACAAGGCC
GCCAG UG UUC AAGUGA CGG UUGCCGU UG \
CGGUC AC AAG UUCACU GUC AACGGCG AC A
AAGGUCAAAAAAAGGACGCG^ A- A C C G C UCUCCGGUACU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| Comment | This miRNA is also present in hexactinellid sponges (Sperling et al. 2010) |
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
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| Mature sequence |
Emu-Mir-2019_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AAAGUGAUCGGGUUGCCGUCUG -22
Get sequence
|
|---|
| Star sequence |
Emu-Mir-2019_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
47- CGCGGCAAGCUGCUCACUUCGA -69
Get sequence
|
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