| MirGeneDB ID | Esc-Mir-12531 |
|---|
| Family name |
MIR-12531 (all species) |
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| Seed |
GACGAGC |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Obi-Mir-12531
Ovu-Mir-12531
|
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| Node of Origin (locus) |
Coleoidea
|
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| Node of Origin (family) |
Coleoidea
|
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Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-34_pre_SRIE01002184.1:2166022-2166283: 101-162 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUUCGUGAGAAUAGCCAGCGUCUGUACGUCCGACGAGCAGGCACGAUAGCGUCUGUGUGUUUGAAAAGGCGCGAUAGCGUCUGUACGUCCGACGGGCGGACGUGAUAUCAUCUACGUCAUUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AUUCGUGAGAAUAGCCA--| UA C A ACG A CUGUGUG
GCGUCUG CGUC GACG GCAGGC AU GCGU U
UGCAGGC GCAG CUGC UGUCUG UA CGCG U
CUUACUGCAUCUACUAUAG^ GG C A CGA G GAAAAGU
120 110 100 90 80 70 |
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| Deep sequencing |
|
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| Comment | There is a second Dicer cut +1 on the 3p arm. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Esc-Mir-12531_5p |
| mirBase accession | None |
|---|
| Sequence |
0- CGACGAGCAGGCACGAUAGCGU -22
Get sequence
|
|---|
| Co-mature sequence |
Esc-Mir-12531_3p |
| mirBase accession | None |
|---|
| Sequence |
40- GCGAUAGCGUCUGUACGUCCGA -62
Get sequence
|
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