| MirGeneDB ID | Esc-Mir-12550 |
|---|
| Family name |
MIR-12550 (all species) |
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| Seed |
GAUCGGU |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Obi-Mir-12550
Ovu-Mir-12550
|
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| Node of Origin (locus) |
Coleoidea
|
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| Node of Origin (family) |
Coleoidea
|
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Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-53_pre_SRIE01045345.1:589741-589881: 41-101 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GCAAAAGAAGAAACAACACGAAGACUGUAAAGAUCGGUACAGUGGCUUUGGCCUGGAAUGGUAAUUUCCAAAGCUUCUCGUACCCAUCCUUAUGCUCUUUGGAAUAUCAACGCCUUUGCAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GCAAAAGAAGAAACAACA-- CU A C -| U CCUGGAA
CGAAGA GUAA GAU GGUAC AG GGCUUUGG U
GUUUCU UAUU CUA CCAUG UC UCGAAACC G
AACGUUUCCGCAACUAUAAG CG C C C^ U UUUAAUG
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
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| Comment | There is a second Dicer cut -1 on both arms. |
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| 3' NTU |
Unknown
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Esc-Mir-12550_5p |
| mirBase accession | None |
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| Sequence |
0- AGAUCGGUACAGUGGCUUUGGC -22
Get sequence
|
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| Star sequence |
Esc-Mir-12550_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
38- CAAAGCUUCUCGUACCCAUCCUU -61
Get sequence
|
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