MirGeneDB ID | Esc-Mir-153-P18a |
Family name |
MIR-153 (all species) |
Seed |
UGCAUAG |
Species |
Hawaiian bobtail squid (Euprymna scolopes) |
MiRBase ID |
|
Paralogues |
Esc-Mir-153-P18b
|
Orthologues |
Agr-Mir-153
Asu-Mir-153
Bfl-Mir-153
Bko-Mir-153
Bla-Mir-153
Bpl-Mir-153
Cin-Mir-153
Csc-Mir-153-P18
Cte-Mir-153
Dgr-Mir-153
Dma-Mir-153
Dpu-Mir-153
Eba-Mir-153
Egr-Mir-153
Gsa-Mir-153
Gsp-Mir-153
Hmi-Mir-153
Hru-Mir-153
Isc-Mir-153
Lan-Mir-153
Lgi-Mir-153
Llo-Mir-153
Mgi-Mir-153
Mom-Mir-153
Npo-Mir-153
Obi-Mir-153
Ofu-Mir-153
Ovu-Mir-153
Pau-Mir-153
Pca-Mir-153
Pcr-Mir-153
Pdu-Mir-153
Pfl-Mir-153
Pmi-Mir-153
Pve-Mir-153
Rph-Mir-153
Sko-Mir-153
Sme-Mir-153
Snu-Mir-153
Spu-Mir-153
Tur-Mir-153
War-Mir-153
Xbo-Mir-153
|
Node of Origin (locus) |
E. scolopes
|
Node of Origin (family) |
Bilateria
|
Genome context (GCA_004765925.1_miRNA_LOCI) |
Esc-Mir-153-P18b_pre_SRIE01043446.1:32-175: 44-101 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUAUUGGCACUUACUUAUCAGUGAACCUGAAAGCUUUUGUGAUUUAGCGAUUGUAGACUUAACUAAUUGCAUAGUCACAAAAGUGAUCGGGAUGCUGACAAUCUCUACUAAUCUCUUG
Get precursor sequence
|
Structure | 10 20 30 40 50
UUAUUGGCACUUACUUA---| GAA AA UA GUAGA
UCAGU CCUGA GCUUUUGUGAUU GCGAUU C
AGUCG GGGCU UGAAAACACUGA CGUUAA U
GUUCUCUAAUCAUCUCUAAC^ UA- AG UA UCAAU
110 100 90 80 70 60 |
Deep sequencing |
|
Comment | There is a second Dicer cut +1 on both arms. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Esc-Mir-153-P18a_5p* |
mirBase accession | None |
Sequence |
0- AAGCUUUUGUGAUUUAGCGAUU -22
Get sequence
|
Mature sequence |
Esc-Mir-153-P18a_3p |
mirBase accession | None |
Sequence |
36- UUGCAUAGUCACAAAAGUGAUC -58
Get sequence
|