| MirGeneDB ID | Esc-Novel-12 |
|---|
| Family name |
ESC-NOVEL-12 (all species) |
|---|
| Seed |
GAAGUAA |
|---|
| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
E. scolopes
|
|---|
| Node of Origin (family) |
E. scolopes
|
|---|
Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-67_pre_SRIE01037308.1:2053586-2053842: 101-157 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AAUAAGAAAAGUGAGAGUUAUGAAACUGCCAGAAGUAAACUUAAGGGUCACUUUAUAUUCUGUUGUGACUCUUCUGUAUGCUGCAGGUGGUCCAACAGAUGCAGGGAAGGAAGGAUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAUAAGAAAAGUGAGAGUUAUGAA--| UG AGA A UU UUUAUA
AC CC AGUA AC AAGGGUCAC \
UG GG UCGU UG UUCUCAGUG U
CUAGGAAGGAAGGGACGUAGACAACC^ GU ACG A UC UUGUCU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Esc-Novel-12_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AGAAGUAAACUUAAGGGUCACU -22
Get sequence
|
|---|
| Star sequence |
Esc-Novel-12_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- UGACUCUUCUGUAUGCUGCAGG -57
Get sequence
|
|---|
