| MirGeneDB ID | Esc-Novel-46 |
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| Family name |
COL-NOVEL-46 (all species) |
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| Seed |
CUCCAAC |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Obi-Novel-46
Ovu-Novel-46
|
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| Node of Origin (locus) |
Coleoidea
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| Node of Origin (family) |
Coleoidea
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Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-46_pre_SRIE01018097.1:4821199-4821339: 41-101 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GACCACGAAGAGACUGACAACUUGGGGGUUUCUCCAACCAAUUUUCGGUACCUUAAUAUAUCAAGUGUGGUACCAAAGAUGAUUGGAGAGAUCCCCCAUAGUUUGAUGAUCAUCCUUUCGG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GACCACGAAGAGACUGAC - -| CCA C UUAAUAU
AACU UGGGGG UUUCUCCAA AUUUU GGUACC A
UUGA ACCCCC AGAGAGGUU UAGAA CCAUGG U
GGCUUUCCUACUAGUAGU U U^ AG- A UGUGAAC
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | Although the 3' uridine is templated this give a three 3-nt offset. |
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| 3' NTU |
Yes
|
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| Motifs | No |
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Tissue expression
|
|
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| Mature sequence |
Esc-Novel-46_5p |
| mirBase accession | None |
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| Sequence |
0- UCUCCAACCAAUUUUCGGUACC -22
Get sequence
|
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| Star sequence |
Esc-Novel-46_3p* |
| mirBase accession | None |
|---|
| Sequence |
40- UACCAAAGAUGAUUGGAGAGA -61
Get sequence
|
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