| MirGeneDB ID | Esc-Novel-5 |
|---|
| Family name |
ESC-NOVEL-5 (all species) |
|---|
| Seed |
CCGCGAU |
|---|
| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
E. scolopes
|
|---|
| Node of Origin (family) |
E. scolopes
|
|---|
Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-60_pre_SRIE01024040.1:4062124-4062382: 101-159 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GGUACGACUGCAUUUCUUAUUUGGUAUUCCUCCGCGAUCAGUGACCACAGCAGCCAAACAAAUACGGUUGUGGGCAUCGAAAGCGGGGAAGUACUGAAGGGAUUACAGCACAGAAGACA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGUACGACUGCAUUUCUUA--| UG C GA A A AGCCAAA
UU GUAUU CUCCGC UC GUG CCACAGC \
AA CAUGA GGGGCG AG UAC GGUGUUG C
ACAGAAGACACGACAUUAGGG^ GU A AA C G GCAUAAA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Esc-Novel-5_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UCCGCGAUCAGUGACCACAGC -21
Get sequence
|
|---|
| Star sequence |
Esc-Novel-5_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- UGUGGGCAUCGAAAGCGGGGA -59
Get sequence
|
|---|
