| MirGeneDB ID | Esc-Novel-6 |
|---|
| Family name |
ESC-NOVEL-6 (all species) |
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| Seed |
CGCGAAC |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
E. scolopes
|
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| Node of Origin (family) |
E. scolopes
|
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Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-61_pre_SRIE01024843.1:6556384-6556644: 101-161 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAUCACUCCUCCAAAUUAUUCUGAGGUGUUACGCGAACCGCUGCUAACCUUGUCUAAUUCUAGUCAACAAGGCAAGCUGCUGUUAGUGGAAUACCUUUGAAAAUGUACAUCAUUUCUUACC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CAUCACUCCUCCAAAUUA--| U A G C U AA CUAAUU
UUC GAGGUGUU CGC AAC GC GCU CCUUGU \
AAG UUCCAUAA GUG UUG CG CGA GGAACA C
CCAUUCUUUACUACAUGUAA^ U G A U U AC ACUGAU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Dicer cut -1 on both arms. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Esc-Novel-6_5p |
| mirBase accession | None |
|---|
| Sequence |
0- ACGCGAACCGCUGCUAACCUUGU -23
Get sequence
|
|---|
| Star sequence |
Esc-Novel-6_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- AAGGCAAGCUGCUGUUAGUGGAA -61
Get sequence
|
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