| MirGeneDB ID | Gga-Mir-12223 |
|---|
| Family name |
MIR-12223 (all species) |
|---|
| Seed |
AGUUCAG |
|---|
| Species |
Chicken (Gallus gallus) |
|---|
| MiRBase ID |
gga-mir-12223
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
G. gallus
|
|---|
| Node of Origin (family) |
G. gallus
|
|---|
Genome context
(Gallus_gallus.GRCg6a) |
13: 17776577-17776631 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UUUACAGUAGUCUAGCAGCUGGUCAGGACAUAGUUCAGCUGUCUGUGAAUGAGGGCAGAGACCUCAUCAGAGAGGCUGGGCUCUGUUCUGAGCUGCUCGUGCUCAACAGAACUGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUUACAGUAGUCUAGCA--| U - U G G A GCA
GC GG UCAGGACA AGUUCAGCU UCU UGA UGAGG \
CG UC AGUCUUGU UCGGGUCGG AGA ACU ACUCC G
CGUCAAGACAACUCGUGCU^ - G C - G - AGA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
| Ad |
Ad |
Ad |
Br |
Br |
Ce |
Ce |
Ce |
Ce |
Gg |
He |
He |
Hy |
Hy |
Ki |
Ki |
Li |
Li |
Lu |
Lu |
Ov |
Pr |
Pr |
Sc |
Sc |
Sp |
Sp |
Te |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Gga-Mir-12223_5p |
| mirBase accession | MIMAT0049923 |
|---|
| Sequence |
0- UAGUUCAGCUGUCUGUGAAUGAGG -24
Get sequence
|
|---|
| Star sequence |
Gga-Mir-12223_3p* |
| mirBase accession | MIMAT0049924 |
|---|
| Sequence |
33- UCAUCAGAGAGGCUGGGCUCUG -55
Get sequence
|
|---|
