MirGeneDB 2.1

MirGeneDB ID

Gga-Mir-12246

Family name MIR-12246 (all species)
Seed UGGGUGG
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-12246
Paralogues
Orthologues
Node of Origin (locus) G. gallus
Node of Origin (family) G. gallus
Genome context
(Gallus_gallus.GRCg6a)
21: 5009985-5010042 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCUAUGACGUGGUUAGUGGGCAUGGUGGAGUUGGGUGGACGGUUGGACUUGAUGGUUGUAGUGGUCUUUUCCAACCUUCUUCCCCCCUUCACUAUUCCAUGGUUCUCUGAUCCAUCAC
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Structure
        10           20        30        40        50        
UCUAUGACGUGGUUAGU---|  C         UU   U   C       CUU  UGGUU 
                    GGG AUGGUGGAG  GGG GGA GGUUGGA   GA     G
                    CCU UAUCACUUC  CCC UCU CCAACCU   CU     U
CACUACCUAGUCUCUUGGUA^  -         CC   U   U       UUU  GGUGA 
      110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Ad Ad Ad Br Br Ce Ce Ce Ce Ch He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Mir-12246_5p

mirBase accessionMIMAT0049981
Sequence
0- UUGGGUGGACGGUUGGACUUGA -22
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Star sequence

Gga-Mir-12246_3p*

mirBase accessionMIMAT0049982
Sequence
36- UUUUCCAACCUUCUUCCCCCCU -58
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