| MirGeneDB ID | Gmo-Mir-11183 |
|---|
| Family name |
MIR-11183 (all species) |
|---|
| Seed |
CCCAGGU |
|---|
| Species |
Cod (Gadus morhua) |
|---|
| MiRBase ID |
gmo-mir-11183
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
G. morhua
|
|---|
| Node of Origin (family) |
G. morhua
|
|---|
Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_2047: 90781-90832 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CCCCACGUCCCGUGGUUGGCUGCCGUUGGGCCCCAGGUAGAGCGCCUUCACCGCGGACGCUGAAGGAGCUCUACCUGGGGCCCAACGGCUCCCUCACUGCUCAGCAACACCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CCCCACGUCCCGUGGUU--| CU G C GC
GG GCCGUUGGGCCCCAGGUAGAGC CCUUCA C G
CC CGGCAACCCGGGGUCCAUCUCG GGAAGU G G
UCCACAACGACUCGUCACU^ CU A C CA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Gmo-Mir-11183_5p |
| mirBase accession | MIMAT0044169 |
|---|
| Sequence |
0- CCCCAGGUAGAGCGCCUUCACC -22
Get sequence
|
|---|
| Star sequence |
Gmo-Mir-11183_3p* |
| mirBase accession | MIMAT0044170 |
|---|
| Sequence |
30- UGAAGGAGCUCUACCUGGGGCC -52
Get sequence
|
|---|
