MirGeneDB 2.1

MirGeneDB ID

Gmo-Mir-11183

Family name MIR-11183 (all species)
Seed CCCAGGU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-11183
Paralogues
Orthologues
Node of Origin (locus) G. morhua
Node of Origin (family) G. morhua
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_2047: 90781-90832 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCCACGUCCCGUGGUUGGCUGCCGUUGGGCCCCAGGUAGAGCGCCUUCACCGCGGACGCUGAAGGAGCUCUACCUGGGGCCCAACGGCUCCCUCACUGCUCAGCAACACCU
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Structure
        10          20        30        40        50     
CCCCACGUCCCGUGGUU--| CU                      G      C GC 
                   GG  GCCGUUGGGCCCCAGGUAGAGC CCUUCA C  G
                   CC  CGGCAACCCGGGGUCCAUCUCG GGAAGU G  G
UCCACAACGACUCGUCACU^ CU                      A      C CA 
110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-11183_5p

mirBase accessionMIMAT0044169
Sequence
0- CCCCAGGUAGAGCGCCUUCACC -22
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Star sequence

Gmo-Mir-11183_3p*

mirBase accessionMIMAT0044170
Sequence
30- UGAAGGAGCUCUACCUGGGGCC -52
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