| MirGeneDB ID | Gmo-Mir-11187 |
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| Family name |
MIR-11187 (all species) |
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| Seed |
CGUCAUA |
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| Species |
Cod (Gadus morhua) |
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| MiRBase ID |
gmo-mir-11187
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
G. morhua
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| Node of Origin (family) |
G. morhua
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Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
contig124093: 929-988 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAUUGUCAAAGCAGUUUACUGACUCCGACACCGUCAUAACAGCCUUUGGAUCAGGAUGGUUGCCAUGACCAAGGUUUAGUUUUGACGUUGUCUUUGUUGAGAUGGACAUCAGUUUAACCA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CAUUGUCAAAGCAGUUUA- - UCC C U --| U A AGGAUG
CU GAC GACA CGUCA AAC AGCCUU GG UC G
GA UUG CUGU GCAGU UUG UUGGAA CC AG U
ACCAAUUUGACUACAGGUA G UUU U U AU^ - - UACCGU
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Gmo-Mir-11187_5p |
| mirBase accession | MIMAT0044345 |
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| Sequence |
0- CCGUCAUAACAGCCUUUGGAUC -22
Get sequence
|
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| Star sequence |
Gmo-Mir-11187_3p* |
| mirBase accession | MIMAT0044346 |
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| Sequence |
37- ACCAAGGUUUAGUUUUGACGUUG -60
Get sequence
|
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