| MirGeneDB ID | Gmo-Mir-11236 |
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| Family name |
MIR-11236 (all species) |
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| Seed |
CUCCCAU |
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| Species |
Cod (Gadus morhua) |
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| MiRBase ID |
gmo-mir-11236
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
G. morhua
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| Node of Origin (family) |
G. morhua
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Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_2112: 201224-201287 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGAAUUAUGGCGUUCUGGUGGUUGUGAGACCCUCCCAUCUAUCCUCUAUUUCCACAUAUACAUGUGUAGAUGGAAGUAGAAUAGCUGGGAGAGUUUCCCUCCAUCUCUCCCGUCCCUCCUAGAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UGAAUUAUGGCGUUCUG---| UUGU C U CC CAUAUAC
GUGG GAGAC CUCCCA CUAU UCUAUUUCCA A
UACC CUUUG GAGGGU GAUA AGAUGAAGGU U
CAGAUCCUCCCUGCCCUCUC^ UCC- A C -- AGAUGUG
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Gmo-Mir-11236_5p |
| mirBase accession | MIMAT0044408 |
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| Sequence |
0- CCUCCCAUCUAUCCUCUAUUUCCA -24
Get sequence
|
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| Star sequence |
Gmo-Mir-11236_3p* |
| mirBase accession | MIMAT0044409 |
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| Sequence |
42- GAAGUAGAAUAGCUGGGAGAGU -64
Get sequence
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