| MirGeneDB ID | Gmo-Mir-11272 |
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| Family name |
MIR-11272 (all species) |
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| Seed |
ACACUUG |
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| Species |
Cod (Gadus morhua) |
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| MiRBase ID |
gmo-mir-11272
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
G. morhua
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| Node of Origin (family) |
G. morhua
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Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_4591: 103263-103329 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GUUUUUUGAUAAAAUUUGGUUUUGAUUGAGUUUCAUGGUUCUUAUGUGCUUCUUGGACCUCUUGCUAAAGAUAUGAACACUUGAGAACCAUGAGACUCAAUCAGAACCUAAUUUCAGCAAAAUUAGG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GUUUUUUGAUAAAAUUU--| U C UUGGACCUCU
GGUUUUGAUUGAGUUUCAUGGUUCUUA GUG UUC U
CCAAGACUAACUCAGAGUACCAAGAGU CAC AAG G
GGAUUAAAACGACUUUAAU^ U - UAUAGAAAUC
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| Comment | There is a second Drosha cut -1 on the 5p arm. |
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Gmo-Mir-11272_5p* |
| mirBase accession | MIMAT0044457 |
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| Sequence |
0- UUUCAUGGUUCUUAUGUGCUUCUU -24
Get sequence
|
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| Mature sequence |
Gmo-Mir-11272_3p |
| mirBase accession | MIMAT0044458 |
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| Sequence |
45- AACACUUGAGAACCAUGAGACU -67
Get sequence
|
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