MirGeneDB 2.1

MirGeneDB ID

Gmo-Mir-11272

Family name MIR-11272 (all species)
Seed ACACUUG
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-11272
Paralogues
Orthologues
Node of Origin (locus) G. morhua
Node of Origin (family) G. morhua
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_4591: 103263-103329 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUUUUUUGAUAAAAUUUGGUUUUGAUUGAGUUUCAUGGUUCUUAUGUGCUUCUUGGACCUCUUGCUAAAGAUAUGAACACUUGAGAACCAUGAGACUCAAUCAGAACCUAAUUUCAGCAAAAUUAGG
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Structure
        10          20        30        40        50        60   
GUUUUUUGAUAAAAUUU--|                          U   C   UUGGACCUCU 
                   GGUUUUGAUUGAGUUUCAUGGUUCUUA GUG UUC          U
                   CCAAGACUAACUCAGAGUACCAAGAGU CAC AAG          G
GGAUUAAAACGACUUUAAU^                          U   -   UAUAGAAAUC 
     120       110       100        90        80         70
Deep sequencing
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CommentThere is a second Drosha cut -1 on the 5p arm.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-11272_5p*

mirBase accessionMIMAT0044457
Sequence
0- UUUCAUGGUUCUUAUGUGCUUCUU -24
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Mature sequence

Gmo-Mir-11272_3p

mirBase accessionMIMAT0044458
Sequence
45- AACACUUGAGAACCAUGAGACU -67
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