MirGeneDB 3.0

MirGeneDB ID

Gmo-Mir-11275

Family name MIR-11275 (all species)
Seed CAGCCCC
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-11275
Paralogues
Orthologues
Node of Origin (locus) G. morhua
Node of Origin (family) G. morhua
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_505: 10027-10083 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCAGAAGGUCCAACAGCACCCAGGACCUGCCCAGCCCCCGACCCAACAGCCAGCCGGUCCUGCUGGCUGUUGGGUCAGGGGCGGAGAAGGCCCUGGGUAUGGGCACCAAGCCGCGGG
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Structure
        10          20        30         40        50        
CCAGAAGGUCCAACAGC--       A   GC-| A     C            AGCCGG 
                   ACCCAGG CCU   CC GCCCC GACCCAACAGCC      \
                   UGGGUCC GGA   GG CGGGG CUGGGUUGUCGG      U
GGGCGCCGAACCACGGGUA       C   AGA^ -     A            UCGUCC 
     110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-11275_5p

mirBase accessionMIMAT0044461
Sequence
0- CCAGCCCCCGACCCAACAGCC -21
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Co-mature sequence

Gmo-Mir-11275_3p

mirBase accessionNone
Sequence
36- CUGUUGGGUCAGGGGCGGAGA -57
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