MirGeneDB ID | Gmo-Mir-11275 |
Family name |
MIR-11275 (all species) |
Seed |
CAGCCCC |
Species |
Cod (Gadus morhua) |
MiRBase ID |
gmo-mir-11275
|
Paralogues |
|
Orthologues |
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Node of Origin (locus) |
G. morhua
|
Node of Origin (family) |
G. morhua
|
Genome context (Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_505: 10027-10083 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCAGAAGGUCCAACAGCACCCAGGACCUGCCCAGCCCCCGACCCAACAGCCAGCCGGUCCUGCUGGCUGUUGGGUCAGGGGCGGAGAAGGCCCUGGGUAUGGGCACCAAGCCGCGGG
Get precursor sequence
|
Structure | 10 20 30 40 50
CCAGAAGGUCCAACAGC-- A GC-| A C AGCCGG
ACCCAGG CCU CC GCCCC GACCCAACAGCC \
UGGGUCC GGA GG CGGGG CUGGGUUGUCGG U
GGGCGCCGAACCACGGGUA C AGA^ - A UCGUCC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Gmo-Mir-11275_5p |
mirBase accession | MIMAT0044461 |
Sequence |
0- CCAGCCCCCGACCCAACAGCC -21
Get sequence
|
Co-mature sequence |
Gmo-Mir-11275_3p |
mirBase accession | None |
Sequence |
36- CUGUUGGGUCAGGGGCGGAGA -57
Get sequence
|