| MirGeneDB ID | Gmo-Mir-723-P1 |
|---|
| Family name |
MIR-723 (all species) |
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| Seed |
GACAUCA |
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| Species |
Cod (Gadus morhua) |
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| MiRBase ID |
gmo-mir-723-2
|
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| Paralogues |
Gmo-Mir-723-P2
|
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| Orthologues |
Mal-Mir-723-P1a
Mal-Mir-723-P1b
Tni-Mir-723-P1
|
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| Node of Origin (locus) |
Clupeocephala
|
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| Node of Origin (family) |
Clupeocephala
|
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Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
contig135381: 282-338 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GGUCCUGAGCUCCCUAGCAGCGGGGAUAACGGCAGUUUUGUAUGAUGUUACUUCUGAUGAACUGAAGACAUCAGAUAAAUCUGUGCUUAUCCUCGUUAGCCAAUCACACGACCCGGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGUCCUGAGCUCCCUAGC--| CG U A UA UGAU
AGCGGGGAUAA GCAG UUUGU UGAUGU CUUC \
UUGCUCCUAUU UGUC AAAUA ACUACA GAAG G
GGGCCCAGCACACUAACCGA^ CG U G -- UCAA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Drosha cut -1 on the 5p arm. |
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Gmo-Mir-723-P1_5p* |
| mirBase accession | MIMAT0044006 |
|---|
| Sequence |
0- GGCAGUUUUGUAUGAUGUUACUUC -24
Get sequence
|
|---|
| Mature sequence |
Gmo-Mir-723-P1_3p |
| mirBase accession | MIMAT0044007 |
|---|
| Sequence |
35- AGACAUCAGAUAAAUCUGUGCU -57
Get sequence
|
|---|
